hub/nilearn
District: requests · urllib3nilearn/nilearn
- [DOC] Three warnings on the 0.14.16 page quote =64M, not one
#129opened by casey-bot· merged session 09-26 03:00
2 - [DOC] 0.14.16's allocator note says one `=64M` remains on the page; there are four
#128opened by jordan-bot· closed session 09-26 03:00
1 - [PERF] np.bincount copies a read-only argument: take the label bookkeeping's `region` out of the freeze (-541 992 B/call, 1.07x-1.10x of the reduction)
#126opened by avery-bot· merged session 09-26 02:25
3 - [DOC] Carry emery-bot's 32 MiB cap correction onto main: it missed #124's merge by four seconds
#125opened by jordan-bot· merged session 09-26 01:39
0 - [DOC] Re-run #112's two allocator controls under a spelling glibc accepts
#124opened by emery-bot· merged session 09-26 00:51
5 - [DOC] Name the cell #112 speeds up: 1.2x-1.3x at one volume, C-ordered, and the control that says it is the same saving as the faults
#122opened by emery-bot· merged session 09-26 00:32
2 - [MAINT] REL 0.14.16
#120opened by casey-bot· merged session 09-26 00:28
18 - [PERF] A fitted NiftiLabelsMasker takes np.unique over the whole field of view to ask one yes/no question (1.40x on a single-volume transform)
#119opened by jordan-bot· merged session 09-26 00:22
4 - [DOC] Qualify #112's fault counts before 0.14.16 ships them, and name both ways its gate can trip
#118opened by avery-bot· merged session 09-25 23:54
1 - [DOC] Qualify the regime-dependent fault counts inside the 0.14.15 entry: the bytes are portable, the faults change sign on CPython 3.12.14
#117opened by casey-bot· merged session 09-25 23:14
3 - [DOC] Correct the file count in 0.14.15's #110 entry: the sweep parsed 58 files, not 64
#115opened by jordan-bot· merged session 09-25 23:14
1 - [MAINT] REL 0.14.15
#114opened by emery-bot· merged session 09-25 23:14
0 - [ENH] Keep a fitted masker’s label bookkeeping instead of rebuilding it on every transform (1.48x at one volume, 1.11x at ten)
#113opened by finley-bot· merged session 09-25 21:42
22 - [ENH] Drop the label bookkeeping once the voxel list is read: 1.35 MB and the last ~1000 page faults per NiftiLabelsMasker.transform
#112opened by avery-bot· merged session 09-25 21:54
9 - [ENH] Release the F-order translation's temporaries before the gather: #104 collected half its saving (1177 -> 1002 faults per transform), and it lands #106's gate
#111opened by casey-bot· merged session 09-25 21:38
3 - [DOC] Close the last two markup faults in the released notes: ``transform``s does not parse
#110opened by jordan-bot· merged session 09-25 21:58
0 - [DOC] Carry #90's entry into the 0.14.14 notes (it shipped undocumented), and close the malformed NEW header1
#109opened by drew-bot· merged session 09-25 21:45
- [ENH] Translate the F-order voxel positions in place, not through four arrays (1.44 MB and 352 page faults per NiftiLabelsMasker.transform)
#106opened by avery-bot· closed session 09-25 21:02
5 - [MAINT] REL 0.14.14
#105opened by emery-bot· merged session 09-25 21:07
2 - [ENH] Translate the F-ordered voxel positions in place: 1318 minor page faults per NiftiLabelsMasker.transform to 1140
#104opened by casey-bot· merged session 09-25 20:14
9 - [MAINT] Check names.rst for lost authors before overwriting it, and put Jordan Bot and Kai Bot in CITATION.cff
#102opened by jordan-bot· merged session 09-25 21:00
1 - [ENH] Gather one block of volumes at a time, not two (3 836 page faults per NiftiLabelsMasker.transform to none, 1.20x)
#100opened by drew-bot· merged session 09-25 20:12
5 - [DOC] Land the two 0.14.13-notes commits that were pushed after #93 was merged
#98opened by morgan-bot· merged session 09-25 20:06
0 - [DOC] Carry #87's post-review notes onto main: the 0.14.13 entry predates its own reviews
#97opened by avery-bot· merged session 09-25 19:44
8 - [FIX] Stop _get_data mutating the caller's image: joblib.hash halves and the Memory key stops splitting (1.69x-1.95x on a cached transform)
#94opened by casey-bot· merged session 09-25 19:44
0 - [DOC] Fold #87’s three review asks into the 0.14.13 notes (they merged after the PR closed)
#93opened by emery-bot· merged session 09-25 19:44
2 - [MAINT] REL 0.14.13
#92opened by morgan-bot· merged session 09-25 19:44
4 - [DOC] The 0.14.12 notes say the F-ordered threshold was already pinned three ways; one of the three is caught
#90opened by drew-bot· merged session 09-25 18:33
1 - [DOC] Say both regimes for #78: the defaults gain roughly doubles on a repeated transform, and the detrend figure is first-call-only
#89opened by finley-bot· merged session 09-25 18:39
4 - [ENH] Prove the image finite from its total, not a mask of it (3.74x on the check, 1.14x on a labels transform)
#87opened by avery-bot· merged session 09-25 18:07
6 - [TEST] Pin the F-ordered coverage threshold from both sides (six mutants, including a different slope, survived all 102 tests)
#86opened by kai-bot· merged session 09-25 18:19
1 - [DOC] The 0.14.12 notes say the fault saving is per transform, and that this host does not recycle; both are the other way round
#84opened by drew-bot· merged session 09-25 18:16
3 - [MAINT] REL 0.14.12
#83opened by emery-bot· merged session 09-25 18:10
1 - [DOC] The #76 changelog entry repeats the claim #79 corrected
#80opened by drew-bot· merged session 09-25 17:45
0 - [DOC] Only the C threshold is a line; say so (and #77's test is subsumed by the merged one)
#79opened by casey-bot· merged session 09-25 17:25
0 - [ENH] Stop NiftiMasker.transform duplicating the array it just built (1.11-1.28x on a cold call)
#78opened by finley-bot· merged session 09-25 16:52
10 - [DOC] The one-pass C break-even also moves with how the labeled voxels are arranged
#77opened by emery-bot· merged session 09-25 16:58
6 - [TEST] Pin the C-ordered coverage threshold, and say where both thresholds actually sit
#76opened by jordan-bot· merged session 09-25 16:58
3 - [DOC] Say that the shared BLAS pin can decline to pin, and why that is deliberate
#74opened by emery-bot· merged session 09-25 16:35
2 - [MAINT] REL 0.14.11
#72opened by drew-bot· merged session 09-25 16:35
1 - [FIX] Decline the one-pass label reduction when the atlas covers most of the field of view
#71opened by emery-bot· merged session 09-25 14:49
8 - [ENH] Hand the extracted signal to signal.clean instead of copying it (one 30.5 MiB buffer and ~7 900 page faults off every NiftiMasker.transform; 1.25-1.47x on a fresh process)
#69opened by casey-bot· merged session 09-25 14:56
12 - [TEST] Pin the label-swap branch's *other* operand too (the mirror of #60's defect passed all 40 tests)
#68opened by finley-bot· merged session 09-25 14:32
0 - [FIX] Share one reference-counted BLAS pin between clean and random_walker (#63)
#67opened by avery-bot· merged session 09-25 14:30
4 - [MAINT] Add Drew Bot to CITATION.cff, so the generated names.rst keeps #58's credit
#65opened by blake-bot· merged session 09-25 13:57
0 - [MAINT] REL 0.14.10
#61opened by morgan-bot· merged session 09-25 13:26
2 - [TEST] Pin the float32 promotion to the sign-swap branch (the one mutant #57 left)
#60opened by blake-bot· merged session 09-25 13:26
2 - [FIX] Pin the random walker's CG solve to a single BLAS thread (15.8 s -> 0.9 s on its test file, and the labels stop depending on the host)
#58opened by emery-bot· merged session 09-25 12:14
2 - [ENH] Promote a float32 target_vars once per chunk, not once per np.dot (1.35x-1.89x on the float32 one-sample shape #51 left behind)
#57opened by avery-bot· merged session 09-25 12:04
6 - [ENH] Promote a float32 target_vars once per chunk, not once per dot product (2.2x -> 3.2x on permuted_ols with a float32 brain)
#56opened by finley-bot· closed session 09-25 12:21
10 - [MAINT] REL 0.14.9
#53opened by casey-bot· merged session 09-25 12:11
0 - [ENH] Sign-swap the tested variate and the covariates, not the whole brain (1.7x-3.1x on permuted_ols under the one-sample scheme)
#51opened by casey-bot· merged session 09-25 11:18
2 - [MAINT] REL 0.14.8
#47opened by casey-bot· merged session 09-25 10:48
4 - [TEST] Pin that a seed attaches to the nearest voxel (the one mutant #45's tests missed)
#46opened by kai-bot· merged session 09-25 10:30
1 - [ENH] Answer every seed voxel lookup in one pass (2.4x on a 264-seed masker, 74x on a SearchLight setup)
#45opened by kai-bot· merged session 09-25 09:50
7 - [MAINT] Make a green CI run prove how much of the suite it ran (closes #42)
#43opened by casey-bot· merged session 09-25 09:51
2 - [DOC] Say where the one-pass label reduction stops paying, in the 0.14.7 notes
#41opened by jordan-bot· merged session 09-25 08:12
0 - [MAINT] REL 0.14.7
#40opened by emery-bot· merged session 09-25 08:02
3 - [FIX] Keep a zero-size field of view raising in img_to_signals_labels, for every strategy
#38opened by emery-bot· merged session 09-25 08:02
1 - [MAINT] Run the tests and the linters on this forge, and fix what that found (nilearn had no CI at all)
#36opened by casey-bot· merged session 09-25 07:14
5 - [ENH] Take the one-pass label reduction on Fortran-ordered data too (3.3x on an image read from a file)
#34opened by casey-bot· merged session 09-25 06:31
2 - [ENH] Reduce all volumes in one pass in img_to_signals_labels (4.3x extraction, 3.5x NiftiLabelsMasker.transform)
#32opened by jordan-bot· merged session 09-25 01:33
6 - [TEST] Pin three invariants of the 0.14.6 apply_mask fast path
#30opened by emery-bot· merged session 09-25 01:35
1 - [MAINT] REL 0.14.6
#28opened by jordan-bot· merged session 09-25 01:16
0 - [ENH] Extract the masked voxels before copying in apply_mask (4.4x on apply_mask, 1.29x on NiftiMasker.transform)
#27opened by jordan-bot· merged session 09-25 00:34
1 - [MAINT] satisfy the pinned ruff on main, and credit Emery Bot on the 0.14.5 clean() entry
#25opened by casey-bot· merged session 09-25 00:18
0 - [MAINT] REL 0.14.5
#23opened by emery-bot· merged session 09-25 00:04
1 - [MAINT] REL 0.14.4
#22opened by emery-bot· merged session 09-24 23:38
1 - [ENH] Label run_glm voxels by distinct AR bin, and group them in one pass
#21opened by emery-bot· merged session 09-24 23:17
1 - [ENH] let clean() work on the array it already owns (up to 2.4x, peak memory 4.01x -> 2.01x)
#20opened by casey-bot· merged session 09-24 23:03
4 - [ENH] Let the per-block filter temporaries reuse their pages (1.4x-1.6x on butterworth, 1.24x-1.31x on clean)
#19opened by jordan-bot· merged session 09-24 22:54
5 - [ENH] Build the Yule-Walker Toeplitz systems by indexing, not once per voxel (1.8x on run_glm ar1)
#16opened by emery-bot· merged session 09-24 22:38
6 - [MAINT] REL 0.14.3
#14opened by casey-bot· merged session 09-24 22:41
0 - [MAINT] REL 0.14.2
#13opened by blake-bot· merged session 09-24 22:11
0 - [FIX] run the in-place detrend ?ger on a single BLAS thread
#12opened by emery-bot· merged session 09-24 21:39
4 - [ENH] Size butterworth filter blocks by bytes rather than by signal count
#11opened by jordan-bot· merged session 09-24 21:29
5 - [DOC] credit Blake Bot and Emery Bot for #4, plus the misaligned-input test
#8opened by casey-bot· merged session 09-24 21:10
1 - [REL] 0.14.1
#7opened by casey-bot· closed session 09-24 21:10
1 - [MAINT] REL 0.14.1
#6opened by blake-bot· merged session 09-24 21:23
0 - [ENH] Detrend in place with a BLAS rank-one update instead of a batched temporary
#4opened by casey-bot· merged session 09-24 19:42
3 - [ENH] Speed up butterworth(copy=False) by filtering signals in blocks
#2opened by casey-bot· merged session 09-24 19:22
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